[gmx-users] Conversion of the GLYCAM dihedral parameters

2011-08-08 Thread sa
Thank you Olivier for your response. SA -- Message: 2 Date: Thu, 28 Jul 2011 11:20:44 +0100 From: Oliver Grant olivercgr...@gmail.com Subject: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters To: Discussion list for GROMACS users gmx-users

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters

2011-07-28 Thread Oliver Grant
- -- Message: 4 Date: Wed, 20 Jul 2011 07:17:18 -0700 (PDT) From: Austin B. Yongye ybau...@yahoo.com Subject: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format. To: Discussion list for GROMACS users gmx-users@gromacs.org Message-ID

[gmx-users] Conversion of the GLYCAM dihedral parameters

2011-07-21 Thread sa
: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format. To: Discussion list for GROMACS users gmx-users@gromacs.org Message-ID: 1311171438.14853.yahoomailclas...@web161422.mail.bf1.yahoo.com Content-Type: text/plain; charset=utf-8 So my questions

[gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-20 Thread sa
-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format. To: Discussion list for GROMACS users gmx-users@gromacs.org Message-ID: 1311098935.93905.yahoomailclas...@web161426.mail.bf1.yahoo.com Content-Type: text/plain; charset=utf-8 It is normal to have

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-20 Thread Austin B. Yongye
are always set to 0 and  the barrier heights have sometime a negative value. Thank you again for your advice. SA- Message: 1 Date: Tue, 19 Jul 2011 11:08:55 -0700 (PDT) From: Austin B. Yongye ybau...@yahoo.com Subject: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-20 Thread Mark Abraham
, 19 Jul 2011 11:08:55 -0700 (PDT) From: Austin B. Yongye ybau...@yahoo.com mailto:ybau...@yahoo.com Subject: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format. To: Discussion list for GROMACS users gmx-users@gromacs.org mailto:gmx-users

[gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-19 Thread sa
Dear GROMCS users, I am trying to convert some GLYCAM parameters in GROMACS format. For this purpose, I am using the latest GLYCAM parameters downloaded from the RJ. Woods’ website and the examples given in the acpype code (here for the dihedral angles) :

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-19 Thread Mark Abraham
On 19/07/2011 11:56 PM, sa wrote: Dear GROMCS users, I am trying to convert some GLYCAM parameters in GROMACS format. For this purpose, I am using the latest GLYCAM parameters downloaded from the RJ. Woods' website and the examples given in the acpype code (here for the dihedral angles) :

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-19 Thread Austin B. Yongye
...@anu.edu.au Subject: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format. To: Discussion list for GROMACS users gmx-users@gromacs.org Date: Tuesday, July 19, 2011, 7:08 AM On 19/07/2011 11:56 PM, sa wrote