Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-20 Thread Mark Abraham
Tue, 19 Jul 2011 11:08:55 -0700 (PDT) From: "Austin B. Yongye" mailto:ybau...@yahoo.com>> Subject: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format. To: Discussion list for GROMACS users mailto:gmx-users@gromacs.o

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-20 Thread Austin B. Yongye
respectively. Once a positive value is reached, terms for the O2-P-OS-CP potential have been completely accounted for. Hope that helps. Austin- --- On Tue, 7/19/11, Mark Abraham wrote: From: Mark Abraham Subject: Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the G

[gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-20 Thread sa
gt; 0.0 1 > -3, -2 and 1 signify V3, V2 and V1 terms, respectively. Once a positive > value is reached, terms for the O2-P-OS-CP potential have been completely > accounted for. > > Hope that helps. > Austin- > > > --- On Tue, 7/19/11, Mark Abraham wrot

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-19 Thread Austin B. Yongye
] Conversion of the GLYCAM dihedral parameters in the GROMACS format. To: "Discussion list for GROMACS users" Date: Tuesday, July 19, 2011, 7:08 AM On 19/07/2011 11:56 PM, sa wrote: Dear GROMCS users,

Re: [gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-19 Thread Mark Abraham
On 19/07/2011 11:56 PM, sa wrote: Dear GROMCS users, I am trying to convert some GLYCAM parameters in GROMACS format. For this purpose, I am using the latest GLYCAM parameters downloaded from the RJ. Woods' website and the examples given in the acpype code (here for the dihedral angles) :

[gmx-users] Conversion of the GLYCAM dihedral parameters in the GROMACS format.

2011-07-19 Thread sa
Dear GROMCS users, I am trying to convert some GLYCAM parameters in GROMACS format. For this purpose, I am using the latest GLYCAM parameters downloaded from the RJ. Woods’ website and the examples given in the acpype code (here for the dihedral angles) : http://code.google.com/p/acpype/source