Monika,
Daniel has already given the answer. The third column gives the
standard deviation, whereas the second gives the average SAS. You
could've found this answer also by browsing the mailing list archive,
as this is one of those questions being posted every once in a
while...
Cheers,
Tsjerk
Hello All,
For reference, the output files are as:
# This file was created Thu Jan 31 17:27:21 2008
# by the following command:
# g_sas -f pro-total-21ns-300K-PT.xtc -s pro-3ns-300K-PT.tpr -o
pro-21ns-300K-g_sas-area.xvg -or pro-21ns-300K-g_sas-resarea.xvg -oa
pro-21ns-300K-g_sas-atomarea.xvg -
[EMAIL PROTECTED] wrote:
Hello All,
This might sound a bit stupid question. But I have no idea about it. So
here I am asking it.
I am using g_sas to calculate the solvent accessible area. But I am not
able to understand the values the program is giving out. I am using
options -or and -oa to ge
From what I can see in the source the second column is the averaged
area from the whole trajectory and the third column is the standard
deviation.
Correct me anyone if I'm wrong.
- Daniel
On Mar 5, 2008, at 13:54, [EMAIL PROTECTED] wrote:
Hello All,
This might sound a bit stupid questio
Hello All,
This might sound a bit stupid question. But I have no idea about it. So
here I am asking it.
I am using g_sas to calculate the solvent accessible area. But I am not
able to understand the values the program is giving out. I am using
options -or and -oa to get it plotted per residue a
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