otation as found by
> DynDom" ?
>
>
> Thank you
> Lin
>
>
>
>
>
>
> Message: 1
> Date: Thu, 26 May 2011 19:54:29 -0700
> From: Chih-Ying Lin
> Subject: [gmx-users] Domain Motion => How do get the rotational axis
>fromeigenvec
Message: 1
Date: Thu, 26 May 2011 19:54:29 -0700
From: Chih-Ying Lin
Subject: [gmx-users] Domain Motion => How do get the rotational axis
fromeigenvectors ?
To: gmx-users@gromacs.org
Message-ID:
Content-Type: text/plain; charset="iso-8859-1"
Hi
I want to protein'
Hi Lin,
You don't get such axes directly from covariance analysis. If you want
to know which rotations are associated with a certain eigenvector, you
have to run a routine like dyndom (http://fizz.cmp.uea.ac.uk/dyndom/)
on the extreme projections of your trajectory onto an eigenvector.
Cheers,
T
Hi
I want to protein's domain motion.
I use g_covarandg_anaeig to get the eigenvectors.
How can i get the rotational axis of which protein do its domain motion from
those eigenvectors?
I found the papers and the authors plot its rotational axis of domain
motion.
How did they make it ?
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