Datum: Fri, 31 Aug 2012 09:26:38 +0800
Von: 陈应广 525342...@qq.com
An: gmx-users gmx-users@gromacs.org
Betreff: [gmx-users] Glycoproteion MD
Dear all I am interested in simulating a model of Glycoproteion. I
could'nt find the define of the residue in any forcefield .rtp file of GMX. I
-Nachricht
Datum: Fri, 31 Aug 2012 09:26:38 +0800
Von: ?? 525342...@qq.com
An: gmx-users gmx-users@gromacs.org
Betreff: [gmx-users] Glycoproteion MD
Dear all I am interested in simulating a model of Glycoproteion. I
could'nt find the define of the residue in any forcefield .rtp
ensembles within
glycoproteins. Carbohydrate Research 345 (2010) 663–671.
Best regards,
Laércio Pol-Fachin
-
Message: 1
Date: Thu, 30 Aug 2012 21:32:00 -0400
From: Justin Lemkul jalem...@vt.edu
Subject: Re: [gmx-users
Hi Guang,
You can use the GLYCAM force field, which has parameters for carbohydrates
and glycoproteins compatible with AMBER99.
You can get the AMBER topology and structure files directly from their web
interface, the Online Glycoprotein Builder (
http://glycam.ccrc.uga.edu/ccrc/gp/
Dear all I am interested in simulating a model of Glycoproteion. I could'nt
find the define of the residue in any forcefield .rtp file of GMX. I am using
Gromacs 4.5.5 . If any one can help me in getting forcefield parameters for
charmm27/ OPLS/Amber99 in gromacs format please respond. Please
On 8/30/12 9:26 PM, 陈应广 wrote:
Dear all I am interested in simulating a model of Glycoproteion. I could'nt
find the define of the residue in any forcefield .rtp file of GMX. I am using
Gromacs 4.5.5 . If any one can help me in getting forcefield parameters for
charmm27/ OPLS/Amber99 in
Dear all I am interested in simulating a model of Glycoproteion. I could'nt
find the define of the residue in any forcefield .rtp file of GMX. I am using
Gromacs 4.5.5 . If any one can help me in getting forcefield parameters for
charmm27/ OPLS/Amber99 in gromacs format please respond. Please
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