Hu Ugur,
actually you don't have to care to run the lipid pdb by Tieleman through
pdb2gmx at all - just copy the respective lines out of lipid.itp into
ffG43a1bon.itp and ffG43a1nb.itp (or the force field you want to use)
and put "#include pope.itp" into your *.top file - et voila, you're
done. Att
Hi all;
I am new to Gromacs, trying to create a membrane with POPE lipids. I got the
pope.itp and lipid.itp (for Gromos87) files from Tieleman group web site,
and trying to make POPE recognized by pdb2gmx. So far I could not get it
done..
- Can it be because lipid.itp is not for Gromos96? do
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