Re: [gmx-users] How do I monitor dynamics of helices and domain rotation?

There is lots of stuff. Please look in manual 7.4 and 8, which bring order to the the morass of available tools. Mark On Mon, Jul 29, 2013 at 12:29 AM, jayant james wrote: > Hi all, > > 1) I am looking at see if two adjacent helices are changing their > conformation in space. I would like to mon

[gmx-users] How do I monitor dynamics of helices and domain rotation?

Hi all, 1) I am looking at see if two adjacent helices are changing their conformation in space. I would like to monitor whether they are orthogonal to each other or have become parallel to each other during simulations. Is it possible in Gromacs to follow such changes, and if so, what command wou