Re: [gmx-users] How to visualize .gro file without .tpr file

2013-05-20 Thread Nikunj Maheshwari
Alternatively, you can use editconf -f (tpr file) -o (pdb file) to convert .gro to .pdb, and then use the visualization tools such as Pymol to view it. On Tue, May 21, 2013 at 1:01 AM, Vishal Kumar Jaiswal wrote: > Vmd can visualise a GRO file directly without .tpr . I use it to visualise > gro

Re: [gmx-users] How to visualize .gro file without .tpr file

2013-05-20 Thread Vishal Kumar Jaiswal
Vmd can visualise a GRO file directly without .tpr . I use it to visualise gro files On Tue, May 21, 2013 at 12:59 AM, Bao Kai wrote: > HI, all, > > I have a small question here. I usually use ngmx to visualize the > .gro or .trr file with a .tpr file. > > While after simulation, I use editco

[gmx-users] How to visualize .gro file without .tpr file

2013-05-20 Thread Bao Kai
HI, all, I have a small question here. I usually use ngmx to visualize the .gro or .trr file with a .tpr file. While after simulation, I use editconf to generate a new .gro file. Then I failed to visualize the new .gro file since the .tpr file did not work for the new .gro file now. I wonder if