Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Sergio Manzetti
Thanks, but I will start from scratch. On Fri, Dec 24, 2010 at 3:13 PM, Justin A. Lemkul wrote: > Quoting Sergio Manzetti : > > > Justin, THe FFTW messagte was AFTER sudo make install. > > > > Then you're not an admin. You can always do the installations in your home > directory (for both FF

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Justin A. Lemkul
Quoting Sergio Manzetti : > Justin, THe FFTW messagte was AFTER sudo make install. > Then you're not an admin. You can always do the installations in your home directory (for both FFTW and Gromacs) by specifying an appropriate --prefix during configuration. -Justin > On Fri, Dec 24, 2010 at

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Sergio Manzetti
Justin, THe FFTW messagte was AFTER sudo make install. On Fri, Dec 24, 2010 at 2:53 PM, Sergio Manzetti < sergio.manze...@vestforsk.no> wrote: > Well here is the FFTW message at make install: > > /usr/bin/install -c -m 644 'fftw3.h' '/usr/local/include/fftw3.h' > /usr/bin/install: cannot rem

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Sergio Manzetti
Well here is the FFTW message at make install: /usr/bin/install -c -m 644 'fftw3.h' '/usr/local/include/fftw3.h' /usr/bin/install: cannot remove `/usr/local/include/fftw3.h': Permission denied /usr/bin/install -c -m 644 'fftw3.f' '/usr/local/include/fftw3.f' /usr/bin/install: cannot remove `/usr

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Sergio Manzetti
Thanks again J, is that compulsory each time one installs something new? On Fri, Dec 24, 2010 at 2:50 PM, Justin A. Lemkul wrote: > Quoting Sergio Manzetti : > > > Thanks J, I think I will install Ubuntu entirely first, because I just > tried > > to install FFTW now, and managed only to get to m

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Justin A. Lemkul
Quoting Sergio Manzetti : > Thanks J, I think I will install Ubuntu entirely first, because I just tried > to install FFTW now, and managed only to get to make install, then I got > permission denied messages, so even though I thought I was the admin, I am > seemingly not. > Before blowing away y

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Sergio Manzetti
Thanks J, I think I will install Ubuntu entirely first, because I just tried to install FFTW now, and managed only to get to make install, then I got permission denied messages, so even though I thought I was the admin, I am seemingly not. On Fri, Dec 24, 2010 at 2:44 PM, Justin A. Lemkul wrote:

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Justin A. Lemkul
Quoting Sergio Manzetti : > Thanks Justin, here is it the copy-out: > > ser...@sergio-laptop:~/Desktop/gromacs-4.5.3$ ./configure > checking build system type... i686-pc-linux-gnu > checking host system type... i686-pc-linux-gnu > checking for a BSD-compatible install... /usr/bin/install -c > chec

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Sergio Manzetti
Thanks Justin, here is it the copy-out: ser...@sergio-laptop:~/Desktop/gromacs-4.5.3$ ./configure checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane..

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Justin A. Lemkul
Quoting Sergio Manzetti : > Not really, there were no errors with ./configure > That's simply not possible. The purpose of configuration is to determine specifications of your system, which are then used to write the Makefile. If you have no Makefile, then something failed. If you want to try to

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Sergio Manzetti
Not really, there were no errors with ./configure so I downloaded the version through ubunto sudo -apt get install gromacs but it was old version On Fri, Dec 24, 2010 at 10:53 AM, Mark Abraham wrote: > On 24/12/2010 6:45 PM, Sergio Manzetti wrote: > > Hi thanks, but if I use make it says mak

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-24 Thread Mark Abraham
On 24/12/2010 6:45 PM, Sergio Manzetti wrote: Hi thanks, but if I use make it says make no Makefile found... Right, so configure didn't work, unlike your statement that it did work... Troubleshoot the step that failed, not things that came after it... Mark On Thu, Dec 23, 2010 at 10:46 PM

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-23 Thread Terry
On Fri, Dec 24, 2010 at 3:45 PM, Sergio Manzetti < sergio.manze...@vestforsk.no> wrote: > Hi thanks, but if I use make it says make no Makefile found... > > Yes, Makefile should be generated by configure. You should check the last few lines that configure output to your screen and the configure lo

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-23 Thread Sergio Manzetti
Hi thanks, but if I use make it says make no Makefile found... On Thu, Dec 23, 2010 at 10:46 PM, Mark Abraham wrote: > On 23/12/2010 9:12 PM, Sergio Manzetti wrote: > >> >> >> >> >> Dear Users, I am unable to get pass the first step of ./configure . This >> step works, but when typing "make" it

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-23 Thread Mark Abraham
On 23/12/2010 9:12 PM, Sergio Manzetti wrote: Dear Users, I am unable to get pass the first step of ./configure . This step works, but when typing "make" it says: no targets specified and no makefile found. That suggests configure did not work. Should it be like this, or is it compulso

Re: [gmx-users] Installation GROMACS UBUNTU

2010-12-23 Thread Rodrigo Faccioli
I would like to suggest to you read [1] Furthermore, you can read INSTALL.cmake file which explains some steps to compile Gromacs through cmake command. [1] http://www.gromacs.org/Developer_Zone/Cmake -- Rodrigo Antonio Faccioli Ph.D Student in Electrical Engineering University of Sao Paulo - U

[gmx-users] Installation GROMACS UBUNTU

2010-12-23 Thread Sergio Manzetti
Dear Users, I am unable to get pass the first step of ./configure . This step works, but when typing "make" it says: no targets specified and no makefile found. Should it be like this, or is it compulsory to use cmake? -- gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/m