Hi Dr. David While searching, I saw the notes of Dr. Haruna from SGI: http://www.gromacs.org/pipermail/gmx-users/2005-August/016430.html
I thought of installing gromacs-3.2.1 instead of 3.3.1 I have followed the procedure as given by Dr. Haruna and
added 3 patches. It appears to me that ./configure for gmx went okay, and it’s
output is as follows: ________________________________________________________ GROMACS is ready to compile. * Binaries and libraries for this host will be installed in
/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/bin
/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/lib and shared data will placed in /usr/people/guest/gromacs-3.2.1/share (You can set this with --prefix, --exec-prefix and
--datadir) ________________________________________________________ When I did make It, however, gave me following last output with error at the
end ________________________________________________________ Making all in contrib Making all in admin Making all in scripts cat
./GMXRC.in | sed
's,@bindir\@,/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/bin,' > GMXRC cat
./GMXRC.csh.in | sed 's,@libdir\@,/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/lib,'
| \ sed
's,@bindir\@,/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/bin,' | \ sed
's,@datadir\@,/usr/people/guest/gromacs-3.2.1/share,' | \ sed
's,@mandir\@,/usr/people/guest/gromacs-3.2.1/man,' > GMXRC.csh cat
./GMXRC.bash.in | sed 's,@libdir\@,/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/lib,'
| \ sed
's,@bindir\@,/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/bin,' | \ sed
's,@datadir\@,/usr/people/guest/gromacs-3.2.1/share,' | \ sed
's,@mandir\@,/usr/people/guest/gromacs-3.2.1/man,' > GMXRC.bash cat
./GMXRC.zsh.in | sed
's,@libdir\@,/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/lib,' | \ sed
's,@bindir\@,/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/bin,' | \ sed
's,@datadir\@,/usr/people/guest/gromacs-3.2.1/share,' | \ sed
's,@mandir\@,/usr/people/guest/gromacs-3.2.1/man,' > GMXRC.zsh Making all in share Making all in top Making all in tutor Making all in nmr1 Making all in nmr2 Making all in speptide Making all in water Making all in gmxdemo Making all in methanol Making all in mixed Making all in template cat
./Template.mak | \ sed
's,@LDFLAGS\@,-L/usr/people/guest/gromacs-3.2.1/mips-sgi-irix6.5/lib
-L/usr/people/guest/fftw-2.1.5/lib -woff 84,' | \ sed
's,@LIBS\@,-lmd -lgmx -lnsl -lrfftw -lfftw -lm -lmpi -lXm -lXt -lSM
-lICE -lXext -lX11 -L/usr/people/guest/fftw-2.1.5/lib
-L/usr/lib32/mips4/r10000 -L/usr/lib32/mips4 -L/usr/lib32 -lmpi -lftn -lm ,' |
\ sed
's,@CFLAGS\@,-O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON
-LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174
-D__INLINE_INTRINSICS
-I/usr/people/guest/gromacs-3.2.1/include,' | \ sed
's,@CC\@,cc,' | \ sed
's,@host\@,mips-sgi-irix6.5,' >Makefile.mips-sgi-irix6.5 Making all in html Making all in . Making all in images Making all in online Making all in include Making all in . Making all in types Making all in man Making all in man1 cd
. && /bin/sh /usr/people/guest/gromacs-3.2.1/config/missing --run
aclocal-1.7 /usr/people/guest/gromacs-3.2.1/config/missing[33]:
aclocal-1.7: not found WARNING: `aclocal-1.7' is needed, and you do not seem to
have it handy on your
system. You might have modified some files without having the proper
tools for further handling them. Check the `README' file, it often
tells you about the needed prerequirements for installing this
package. You may also peek at any GNU archive site, in case some other
package would contain this missing `aclocal-1.7' program. *** Error code 1 (bu21) *** Error code 1 (bu21) ________________________________________________________ Can you please suggest where and how can I install this ‘alocal-1.7’
and how to fix this error. I do not have support from expert UNIX people, and I am very
desperate to install GROMACS, I will appreciate help regarding this. Kind Regards Akshay Akshay Patny Graduate Research Assistant Research Institute of Pharmaceutical
Sciences |
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