Re: [gmx-users] Optimizing system size by moving from rectangular to hexagonal cells

2010-06-25 Thread Mark Abraham
- Original Message - From: 张春雷 Date: Friday, June 25, 2010 18:06 Subject: Re: [gmx-users] Optimizing system size by moving from rectangular to hexagonal cells To: Discussion list for GROMACS users > I think you may try "trjconv -ur". I don't think that can work, be

Re: [gmx-users] Optimizing system size by moving from rectangular to hexagonal cells

2010-06-25 Thread 张春雷
I think you may try "trjconv -ur". 2010/6/25 Marc Baaden > > Dear All, > > Trying to optimize some simulation systems, I noticed that I could > actually gain quite some degrees of freedom by changing the xy > dimension of my simulation system from square/rectangular to hexagonal. > I wonder how

[gmx-users] Optimizing system size by moving from rectangular to hexagonal cells

2010-06-25 Thread Marc Baaden
Dear All, Trying to optimize some simulation systems, I noticed that I could actually gain quite some degrees of freedom by changing the xy dimension of my simulation system from square/rectangular to hexagonal. I wonder how one would do that in order to preserve at best the properties of an a