If you really want to use OPLS/AA then you can find DNA parameters on the
Gromacs website using the following link.
http://www.gromacs.org/component/option,com_docman/task,doc_details/gid,45/Itemid,26/
However i am not sure that these parameters are well tested and i am not
sure if they have
Jeff Woodford wrote:
Hi all,
Forgive me if this is a stupid question, but:
I am attempting to simulate the interaction between a peptide and a DNA
strand using the OPLS/AA force field. However the parameters for the
DNA bases don’t appear to be included. Where might I find these
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