Thank you sir for a reply , I missed those atoms , I will try to replace
it and then do it. The out put file contains not length but bonds, It says
average persistence length is 4.3 bonds. I do not know how to calculate
helical axis, I will try today using 3DNA and let you know.
Thank you very
Hi,
I have not used g_polystat, and I cannot say about usage of this tool. I
observed that you missed two oxygen atoms (O3' and O5') in the backbone
atom index.
There are several methods for the calculation of persistence length of a
polymer, and you may look into literature for theories. For exa
Hi all,
I want to calculate the persistence length of whole DNA
molecule. I know that we can calculate it by using option g_polystat -f
.trr -p p.xvg , but I am not able to figure out what set of of atoms I have
to select while making the index, so that I could get persistence length o
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