[gmx-users] Position restraints on a pentamer

Dear colleagues,    I want to do MD simulation of only the extracellular domain of a pentamer, excluding the transmembrane domain. So, I want to restrain the part of the extracellular domain in contact with the transmembrane domain. I am using position restraints for few of

[gmx-users] Position restraints on a pentamer

. Rest of them have vanderwaals interactions. Thanks for any kind of suggestion in this regard. Prema. - Original Message - From: [EMAIL PROTECTED] Date: Friday, August 15, 2008 2:00 pm Subject: Position restraints on a pentamer To: gmx-users@gromacs.org Dear colleagues

Re: [gmx-users] Position restraints on a pentamer

: Position restraints on a pentamer To: gmx-users@gromacs.org Dear colleagues, I want to do MD simulation of only the extracellular domain of a pentamer, excluding the transmembrane domain. So, I want to restrain the part of the extracellular domain in contact