[gmx-users] Possible to stop mdrun changing file names when using checkpoint files?

2009-02-16 Thread chris . neale
One option is to avoid checkpoint files all together. I personally use a grompp/mdrun cycle of ~2h segments that was historically done in order to utilize the -sort -shuffle options to gromacs 3. I found it simpler to keep on doing the exact same thing in gromacs 4, even though I no longer

Re: [gmx-users] Possible to stop mdrun changing file names when using checkpoint files?

2009-02-16 Thread Justin A. Lemkul
Dallas B. Warren wrote: When using checkpoint files to continue a run, mdrun overrides the output file names specified by putting ".part" before the file extension. I don't want it to do that, since I have already told it how I want the output files to be named. Is it possible to stop t

[gmx-users] Possible to stop mdrun changing file names when using checkpoint files?

2009-02-16 Thread Dallas B. Warren
When using checkpoint files to continue a run, mdrun overrides the output file names specified by putting ".part" before the file extension. I don't want it to do that, since I have already told it how I want the output files to be named. Is it possible to stop that happening? Catch ya, D