Hi,
Sorry for the late reply. I have tried all the possibilities with filename
extension as mentioned in the VMD molfile details. As said, VMD uses .crd
or .crdbox filename extensions for reading Amber trajectories. I have tried
with both the options ( ie. with .crd and .crdbox extensions) , but
Hi,
FYI, when I feed the coordinates in '.binpos' format, which I generated
after loading the same '.crd' file to VMD, could able to do the job. What I
infer from this is that the VMD molfile, for reading AMBER '.crd'
trajectories, has made for reading AMBER 7 '.crd' formatted trajectories
which
Hi,
Seems plausible, and it's good to know you have the plugins working for at
least one format! The question of whether the plugins are out of step with
the main VMD distribution would be best raised on the VMD mailing list (but
search first!). If you do, you might also suggest that the links in
Can this file be opened in VMD itself?
Mark
On Oct 18, 2013 6:21 AM, anu chandra anu80...@gmail.com wrote:
Dear Gromacs users,
I am trying to use Gromacs to read AMBER trajectories (mdcrd) for doing few
analysis. Unfortunately I ended-up with the following error.
Hi Mark,
Yes. I do can able to load the trajectories successfully in VMD with the
file format option of ' AMBER coordinate with periodic box'. I am using VMD
1.9 version.
Regards
Anu
On Fri, Oct 18, 2013 at 1:05 PM, Mark Abraham mark.j.abra...@gmail.comwrote:
Can this file be opened in VMD
OK. All GROMACS does is feed your filename extension to the VMD library and
let it choose how to read the file based on that. If that doesn't make
sense (and it seems it doesn't, because GROMACS wasn't told about the
number of atoms, and it needs to know), then the ball is back to you to
choose
Dear Gromacs users,
I am trying to use Gromacs to read AMBER trajectories (mdcrd) for doing few
analysis. Unfortunately I ended-up with the following error.
GROMACS will now assume it to be a trajectory and will try to open it using
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