Re: [gmx-users] Protein Domain Motion

2009-08-13 Thread XAvier Periole
On Aug 13, 2009, at 21:24, Carla Chiodi wrote: Hi Is it possible to simulate the Protein Domain Motion by MD ? Thank you Lin You can do a Coarse-Grained MD using Martini forcefield. You can see huge domain motions on your protein. Does not mean it is right! Regards, Carla __

Re: [gmx-users] Protein Domain Motion

2009-08-13 Thread Justin A. Lemkul
Chih-Ying Lin wrote: Hi I just check on line that the time scale for the Protein Domain Motion is micro-seconds. So, is it possible to simulate the Protein Domain Motion by MD? Anything is possible, given enough brute computing power. As for whether or not it's feasible, that's up to y

[gmx-users] Protein Domain Motion

2009-08-13 Thread Chih-Ying Lin
Hi I just check on line that the time scale for the Protein Domain Motion is micro-seconds. So, is it possible to simulate the Protein Domain Motion by MD? Thank you Lin Chih-Ying Lin wrote: > > > Hi > Is it possible to simulate the Protein Domain Motion by MD ? > Yes, over long time peri

[gmx-users] Protein Domain Motion

2009-08-13 Thread Carla Chiodi
Hi Is it possible to simulate the Protein Domain Motion by MD ? Thank you Lin You can do a Coarse-Grained MD using Martini forcefield. You can see huge domain motions on your protein. Regards, Carla ___ gmx-users mailing listgmx-users@gromacs.org htt

Re: [gmx-users] Protein Domain Motion

2009-08-13 Thread Justin A. Lemkul
Chih-Ying Lin wrote: Hi Is it possible to simulate the Protein Domain Motion by MD ? Yes, over long time periods. Normal Modes Analysis is better suited to this kind of thing. -Justin Thank you Lin ___

[gmx-users] Protein Domain Motion

2009-08-13 Thread Chih-Ying Lin
Hi Is it possible to simulate the Protein Domain Motion by MD ? Thank you Lin ___ gmx-users mailing listgmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/search before posti