Re: [gmx-users] RE: tutorials for Coarse-Grained MD Simulation

2012-08-07 Thread Justin Lemkul
On 8/7/12 6:51 AM, J Peterson wrote: Thank you so much for clearing my doubt. I have another doubt that how can I use g_fg2cg program in reverse transformation (RT) while this program is not an internal GROMACS program. The RT tutorial in MARTINI website says that one has to compile and sourc

[gmx-users] RE: tutorials for Coarse-Grained MD Simulation

2012-08-07 Thread J Peterson
Thank you so much for clearing my doubt. I have another doubt that how can I use g_fg2cg program in reverse transformation (RT) while this program is not an internal GROMACS program. The RT tutorial in MARTINI website says that one has to compile and source the files from rev_trans.tar.gz. How d

RE: [gmx-users] RE: tutorials for Coarse-Grained MD Simulation

2012-08-07 Thread Marzinek, Jan
From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf of J Peterson [think_bey...@aol.com] Sent: Tuesday, August 07, 2012 5:47 AM To: gmx-users@gromacs.org Subject: [gmx-users] RE: tutorials for Coarse-Grained MD Simulation Dear Jan

[gmx-users] RE: tutorials for Coarse-Grained MD Simulation

2012-08-06 Thread J Peterson
Dear Jan, Thanks for the link. The tutorials available here are very helpful start preparing the systems for simulation but would like to know how to merge the custom version of Gromacs for CG available in Martini web site with my existing Gromacs installation. Moreover how to make use of all the