Re: [gmx-users] REMD Statistics

2013-05-06 Thread Mark Abraham
On Mon, May 6, 2013 at 3:48 AM, Kong xq wrote: > Hi Mark, > > > Thanks for your great help. I am sorry for the negligence to state the > variation value correctly( it should be 0.011 rather than 0.11). Does this > somewhat small value indicate the generalized equilibrium achieved? It might be

Re: [gmx-users] REMD Statistics

2013-05-05 Thread Kong xq
Hi Mark, Thanks for your great help. I am sorry for the negligence to state the variation value correctly( it should be 0.011 rather than 0.11). Does this somewhat small value indicate the generalized equilibrium achieved? I will search the papers you suggested. I am wondering whether the histog

Re: [gmx-users] REMD Statistics

2013-05-05 Thread Mark Abraham
On Sun, May 5, 2013 at 5:14 PM, Kong xq wrote: > Dear GMX users, > > I have some concerns about the statistics analysis of REMD which do > need your generous help. > > I performed a 50ns isothermal-isobaric REMD simulation with 64 replicas > spaning from 300K to 390K. Then I want to do so

[gmx-users] REMD Statistics

2013-05-05 Thread Kong xq
Dear GMX users, I have some concerns about the statistics analysis of REMD which do need your generous help. I performed a 50ns isothermal-isobaric REMD simulation with 64 replicas spaning from 300K to 390K. Then I want to do some statistics analysis for the results. First, I calculated t