Re: [gmx-users] Re: Ligand simulation for LIE with PME

2013-11-09 Thread Justin Lemkul
On 11/8/13 3:32 PM, Williams Ernesto Miranda Delgado wrote: Greetings again If I use a salt concentration for neutralizing the protein-ligand complex and run MD using PME, and the ligand is neutral, do I perform ligand MD simulation without adding any salt concentration? It could be relevant fo

[gmx-users] Re: Ligand simulation for LIE with PME

2013-11-08 Thread Williams Ernesto Miranda Delgado
Greetings again If I use a salt concentration for neutralizing the protein-ligand complex and run MD using PME, and the ligand is neutral, do I perform ligand MD simulation without adding any salt concentration? It could be relevant for LIE free energy calculation if I don't include salt in ligand