Hi Esteban and Vitaly,
Thanks for your respose, I tried "trjconv" with -pbc mol while generating
movie and it worked this time.
regards,
vivek
On 12 July 2010 16:01, Vitaly Chaban wrote:
> Hmm... Straight lines... Is it VMD that your used to visualize the
> trajectory?
>
> I think this is just
Hmm... Straight lines... Is it VMD that your used to visualize the trajectory?
I think this is just due to PBC. Compute some RDFs and they will give
you an answer if your system is healthy.
Dr. Vitaly Chaban
> I am trying to run MD simulation for octanol using GROMACS, I have
> downloaded the
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