Re: [gmx-users] Re: Parameters for AOT molecule/Too few parameters on line

2010-04-01 Thread Mark Abraham
On 2/04/2010 3:07 PM, Lum Nforbi wrote: Justin, I appreciate your reply. Actually, I have read through the section of building parameter files in chap. 5 several times. The only reason for using atom types instead of numbers is because that is the way they are represented in the ffcharmmbon.

[gmx-users] Re: Parameters for AOT molecule/Too few parameters on line

2010-04-01 Thread Lum Nforbi
Justin, I appreciate your reply. Actually, I have read through the section of building parameter files in chap. 5 several times. The only reason for using atom types instead of numbers is because that is the way they are represented in the ffcharmmbon.itp and ffcharmmnb.itp files. Numbers are n