Re: [gmx-users] Re: Re: RMSD VS. parallel simulation (Mark Abraham)

2008-04-07 Thread Mark Abraham
Dechang Li wrote: In the 16 CPUs simulation, the RMSD of protein at t=0 was about 0.1 nm, why not equal to zero? I used the initial structure for the least squares fit. If you've done an equilibration or EM, the structure can have changed during that. I mean the initial structure is

[gmx-users] Re: Re: RMSD VS. parallel simulation (Mark Abraham)

2008-04-06 Thread Dechang Li
gmx-users-request,您好! Message: 1 Date: Sat, 5 Apr 2008 11:48:15 +0800 From: DeChang Li [EMAIL PROTECTED] Subject: [gmx-users] RMSD VS. parallel simulation To: gmx-users@gromacs.org Message-ID: [EMAIL PROTECTED] Content-Type: text/plain; charset=ISO-8859-1 Dear all, I