Re: [gmx-users] Re: cannot read frames out from trr files

2013-04-04 Thread Justin Lemkul
On 4/3/13 11:03 PM, mu xiaojia wrote: Thanks Justin, It never happens to my simulations before, is there anyway to figure out what caused this corruption? the log file and screen outputs didn't mentioned any error message. I am wandering if it was caused by the unstable super-cluster I am cur

Re: [gmx-users] Re: cannot read frames out from trr files

2013-04-03 Thread mu xiaojia
Thanks Justin, It never happens to my simulations before, is there anyway to figure out what caused this corruption? the log file and screen outputs didn't mentioned any error message. I am wandering if it was caused by the unstable super-cluster I am currently using, because on another super-clu

Re: [gmx-users] Re: cannot read frames out from trr files

2013-04-03 Thread Justin Lemkul
On 4/3/13 8:42 PM, mu xiaojia wrote: Sorry for the typo, the last evidence"4) I also compared the generated files' sizes, A = B in trr, edr , gro, cpt, if B crashes before reaching 100ns, the size would **NOT*** be the same as A." You probably have a corrupted frame. The simulation continue

[gmx-users] Re: cannot read frames out from trr files

2013-04-03 Thread mu xiaojia
Sorry for the typo, the last evidence"4) I also compared the generated files' sizes, A = B in trr, edr , gro, cpt, if B crashes before reaching 100ns, the size would **NOT*** be the same as A." On Wed, Apr 3, 2013 at 7:25 PM, mu xiaojia wrote: > Dear GMX users, > > I am not sure if someone has