Hi all
thanks for your valuable suggestions. But still i'm not clear. I have tried
using the .tpr file with make_ndx but the index group is displayed is
similar to that of the one with .gro file. I have manually identified the
residues and when i ran the g_mindist with the ligand 0f 18 atoms again
Hi,
if you don't want to be very accurate, you can select basing on the residue
name since LEU, ILE, VAL...etc, are universally considered hydrophobic
2012/11/14 Justin Lemkul
>
>
> On 11/14/12 2:27 AM, Raj wrote:
>
>> Hi all,
>>
>> can some one tel me how can i prepare a index file specifying
On 11/14/12 2:27 AM, Raj wrote:
Hi all,
can some one tel me how can i prepare a index file specifying the
hydrophobic atoms along for measuring the hydrophobic contacts in the
systems alone.
There is no straightforward way to do this, as far as I know. I generally
construct such groups by
Hi all,
can some one tel me how can i prepare a index file specifying the
hydrophobic atoms along for measuring the hydrophobic contacts in the
systems alone.
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