Re: [gmx-users] Regarding g_enemat

2011-04-13 Thread Justin A. Lemkul
bipin singh wrote: Thanks for your reply The following terms are present in my energy files 1 Angle2 Proper-Dih. 3 Improper-Dih.4 LJ-14 5 Coulomb-14 6 LJ-(SR) 7 Disper.-corr.8 Coulomb-(SR) 9 Coul.-recip.10 Potential 11 Kinetic-E

Re: [gmx-users] Regarding g_enemat

2011-04-13 Thread bipin singh
Thanks for your reply The following terms are present in my energy files 1 Angle2 Proper-Dih. 3 Improper-Dih.4 LJ-14 5 Coulomb-14 6 LJ-(SR) 7 Disper.-corr.8 Coulomb-(SR) 9 Coul.-recip.10 Potential 11 Kinetic-En. 12 Total-Energy

Re: [gmx-users] Regarding g_enemat

2011-04-13 Thread Justin A. Lemkul
bipin singh wrote: Hello, I am using g_enemat to calculate the energy matrix from the energy file(edr file) and I am supplying Protein as a group in -groups option. The command I am supplied is as follows: g_enemat -f file.edr -groups groups.dat -emat emat.xpm -etot energy.xvg -temp 328 -noco

[gmx-users] Regarding g_enemat

2011-04-13 Thread bipin singh
Hello, I am using g_enemat to calculate the energy matrix from the energy file(edr file) and I am supplying Protein as a group in -groups option. The command I am supplied is as follows: g_enemat -f file.edr -groups groups.dat -emat emat.xpm -etot energy.xvg -temp 328 -nocoul -nolj -nomean but I