[gmx-users] SMD : pulling both primes of DNA

2013-03-28 Thread Thomas Schlesier
The easiest solution would be using 'pull_geometry = distance' in all three dimensions. Then you can be sure that both groups are pulled together. Small remark: One group would be fixed for the pulling, and the second group gets pulled towards the first group. So if you want to have both groups

[gmx-users] SMD : pulling both primes of DNA

2013-03-27 Thread raghav singh
Hello All, My simulation system is composed of DNA and want to pull both of the primes at the same time towards each other. I have tried every possible set of parameters in pull code...and i am not able to pull them together. it's like ... the DNA molecule is aligned along Y-axis and if want to p