Subject: RE: [gmx-users] Segmentation fault preprocessing with
pull_geometry = cylinder
Date: Fri, 23 Jan 2009 10:37:17 +0100
Hi,
For my test system it works with those modfications.
Can you file a bugzilla entry and attach all the files necessary
for running grompp?
Berk
> Date: Thu, 22 Jan 2
@gromacs.org
Subject: RE: [gmx-users] Segmentation fault preprocessing with pull_geometry
= cylinder
Date: Fri, 23 Jan 2009 10:37:17 +0100
Hi,
For my test system it works with those modfications.
Can you file a bugzilla entry and attach all the files necessary
for running grompp
lutil.c the loop should go to 1+pull->ngrp, not
> > 1+pull->ngrp+1.
> >
> > With those changes it runs for me.
> > But please check that your results are correct, I have not properly tested
> > the cylinder option.
> >
> > Berk
> >
> > >/ Date
ect=%5Bgmx-users%5D%20Segmentation%20fault%20preprocessing%20with%20pull_geometry%0A%09%3D%09cylinder&In-Reply-To=49778A7E.9010804%40umich.edu>
/Thu Jan 22 10:10:32 CET 2009/
* Previous message: [gmx-users] Segmentation fault preprocessing
with pull_geometry = cylinder
>ngrp, not
1+pull->ngrp+1.
With those changes it runs for me.
But please check that your results are correct, I have not properly tested the
cylinder option.
Berk
> Date: Wed, 21 Jan 2009 15:50:06 -0500
> From: fied...@umich.edu
> To: gmx-users@gromacs.org
> Subject: [gmx-us
Dear all,
On transitioning from Gromacs version 3.3.3 to 4.0.3, I have encountered
a segmentation fault (output below) preprocessing a constraint force
calculation, while using the pull code with the "pull_geometry =
cylinder" option in the mdp file. This problem appears is reproducible
on
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