[gmx-users] Strange bilayer behavior in protein-multimembrane models

Dear all, by doing MD simulations of a protein complex embedded in 2 membranes (inner and outer membrane of bacteria, POPE), we observe a bilayer splitting in one of the membranes. This has the effect that the bilayer forms bubbles with vacuum inside. It might have something to do with the PME

Re: [gmx-users] Strange bilayer behavior in protein-multimembrane models

Thomas Schmidt wrote: Dear all, by doing MD simulations of a protein complex embedded in 2 membranes (inner and outer membrane of bacteria, POPE), we observe a bilayer splitting in one of the membranes. This has the effect that the bilayer forms bubbles with vacuum inside. We have seen