Re: [gmx-users] Temperature range for Gromacs (OPLS)

2007-12-17 Thread Monika
Thanks all of you for suggestion. I were to use water-solvated protein system, so 480K will be quite high for it, so I ll try to choose temperature ranges within 273-373 K. (Hope I have not wrong!!). I wondered such temperature because i have seen some references using temperature 420K or so.

Re: [gmx-users] Temperature range for Gromacs (OPLS)

2007-12-17 Thread Xavier Periole
On Mon, 17 Dec 2007 16:12:28 +0530 Monika <[EMAIL PROTECTED]> wrote: Hello!! I have asked this question since I want to do simulation at 480K to look for high-temperature behavior. Will it be correct if I simulate at this temperature?? You have not mentioned what system would be simulated at

Re: [gmx-users] Temperature range for Gromacs (OPLS)

2007-12-17 Thread David van der Spoel
Monika wrote: Hello!! I have asked this question since I want to do simulation at 480K to look for high-temperature behavior. Will it be correct if I simulate at this temperature?? Thanking you, Regards, Monika It depends on the system (which you do not mention). The FF is made for room tempe

Re: [gmx-users] Temperature range for Gromacs (OPLS)

2007-12-17 Thread Monika
Hello!! I have asked this question since I want to do simulation at 480K to look for high-temperature behavior. Will it be correct if I simulate at this temperature?? Thanking you, Regards, Monika David van der Spoel wrote: Monika wrote: Dear All, I wish to know that at what temperature range

Re: [gmx-users] Temperature range for Gromacs (OPLS)

2007-12-17 Thread David van der Spoel
Monika wrote: Dear All, I wish to know that at what temperature range the Gromacs OPLS-AA parameters are valid? I couldn't find any such information. If anyone has some idea regarding the lower and upper limit of temperature range within which the calculations can be done. Since I think that p

[gmx-users] Temperature range for Gromacs (OPLS)

2007-12-17 Thread Monika
Dear All, I wish to know that at what temperature range the Gromacs OPLS-AA parameters are valid? I couldn't find any such information. If anyone has some idea regarding the lower and upper limit of temperature range within which the calculations can be done. Since I think that parameters are