Re: [gmx-users] Using gromacs 4.0.5 built with FORTIFY_SOURCE feature

Hi, Thank you for the information, > The Fedora packages of GROMACS have been compiled with the default > Fedora build flags which include -Wp,-D_FORTIFY_SOURCE=2 and no such > problems have been encountered. This is both in Fedora 10 and 11, and in > RHEL 4 and 5. Well, This means FORTIFY_SOURC

Re: [gmx-users] Using gromacs 4.0.5 built with FORTIFY_SOURCE feature

Hi, Thanks for the reply, >> I now use gentoo linux with gcc 4.3.4, which has FORTIFY_SOURCE feature. >> >> When I built gromacs 4.0.5 with this gcc, every command, like grompp, >> pdb2gmx >> and so on, makes buffer overflow and stoppes immediately. > > Whatever FORTIFY_SOURCE does, either it is p

Re: [gmx-users] Using gromacs 4.0.5 built with FORTIFY_SOURCE feature

On Tue, 2009-09-08 at 21:11 +0900, Yasuyuki Araki wrote: > hi, > > I now use gentoo linux with gcc 4.3.4, which has FORTIFY_SOURCE feature. > > When I built gromacs 4.0.5 with this gcc, every command, like grompp, pdb2gmx > and so on, makes buffer overflow and stoppes immediately. > > I saw the

Re: [gmx-users] Using gromacs 4.0.5 built with FORTIFY_SOURCE feature

Yasuyuki Araki wrote: hi, I now use gentoo linux with gcc 4.3.4, which has FORTIFY_SOURCE feature. When I built gromacs 4.0.5 with this gcc, every command, like grompp, pdb2gmx and so on, makes buffer overflow and stoppes immediately. Whatever FORTIFY_SOURCE does, either it is poorly-construc

[gmx-users] Using gromacs 4.0.5 built with FORTIFY_SOURCE feature

hi, I now use gentoo linux with gcc 4.3.4, which has FORTIFY_SOURCE feature. When I built gromacs 4.0.5 with this gcc, every command, like grompp, pdb2gmx and so on, makes buffer overflow and stoppes immediately. I saw the archives of this mailing list and found this situation was quite similar