Re: [gmx-users] Visualization problem of bromo atom connected to an aromatic ring due to gromacs or VMD?

Meyer-Almes, Franz-Josef, Prof. Dr. wrote: Dear all, I have two question: 1) Are the atom types I chose for the use of OPLS force field correct? I use gromacs 4.0.7 with opls force field under Ubuntu Linux to simulate enzyme drug interaction. Since the Dundee Prodrg Server conver

[gmx-users] Visualization problem of bromo atom connected to an aromatic ring due to gromacs or VMD?

Dear all, I have two question: 1) Are the atom types I chose for the use of OPLS force field correct? I use gromacs 4.0.7 with opls force field under Ubuntu Linux to simulate enzyme drug interaction. Since the Dundee Prodrg Server converts PDB files of drug structures just in an .itp file comp