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When the only tool you own is a hammer, every problem begins to resemble a nail.
From: gmx-users-boun...@gromacs.org [mailto:gmx-users-boun...@gromacs.org] On
Behalf Of swati patel
Sent: Wednesday, 18 April 2012 8:12 PM
To: Discussion list for GROMACS users
Subject: [gmx-users] afm simulat
Hello everyone,
I am trying to calculate the rupture force between streptavidin and
biotin.Firstly,i have calculated the force by placing my complex in
water.Now,i want to simulate my complex without placing it in water and
then to calculate the rupture force.Can someone tell me,how to simulate a
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Let's try again...
swati patel wrote:
Hello Justin,
I am following your tutorial on umbrella sampling.My project is on afm
simulation of streptavidin-biotin complex.Till index.idx i ve created
all my files.But as
Hello Justin,
I am following your tutorial on umbrella sampling.My project is on afm
simulation of streptavidin-biotin complex.Till index.idx i ve created all
my files.But as per your tutorial you have discussed of frames extraction
and configurations.Since i am dealing with pull afm,so do I also
ibi2010...@iiita.ac.in wrote:
Hello,
I went through the tutorial umbrella sampling and i found that it is
similar to afm simulation only using harmonic potential.
May be i am wrong.Can you just satisfy my curiosity?
They are functional equivalents.
-Justin
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Hello,
I went through the tutorial umbrella sampling and i found that it is
similar to afm simulation only using harmonic potential.
May be i am wrong.Can you just satisfy my curiosity?
Thanx.
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Hi everyone. I'm doing a simulation of a system where a peptide is linked to a
surface and an AFM tip is brought in contact to do force measurements.
The AFM tip moves very slowly (1nm/ms), so I'm simulating stationary tips at
various distances. Does anyone know the most direct measurement f
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