Re: [gmx-users] angle between two domains connected at a hinge

Hi, have look to the orient package for vmd: http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/orient/ In the vmd script repository there is also a python script: http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/fit_angle/ I have done a script using orient which calculate th

[gmx-users] angle between two domains connected at a hinge

There must be several tools to calculate the angle between two domains connected at a hinge. I was wondering if someone has suggestions on any tools, or whether it is possible to do this using a vmd plugin directly for a trajectory? IN my case, I have a reasonable good idea where the hinge is. I wa