Hi all,
I have been trying to pdbgmx my protein to obtain the gro and top files as
follows:
pdb2gmx -f ${MOL}.pdb -o ${MOL}.gro -p ${MOL}.top -ter -ignh
However, I get an error message that states:
Atom OXT in residue SER 29 was not found in rtp entry SER with 8 atoms
while sorting atoms
I f
06 Sep 2011 22:35:09 +1000
From: Mark Abraham
Subject: Re: [gmx-users] atom type OXT
To: Discussion list for GROMACS users
Message-ID: <4E66137D.9040103 at anu.edu.au>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed
On 6/09/2011 11:39 AM, Sweta Iyer wrote:
Hi all,
I have been tryin
On 6/09/2011 11:39 AM, Sweta Iyer wrote:
Hi all,
I have been trying to pdbgmx my protein to obtain the gro and top files as
follows:
pdb2gmx -f ${MOL}.pdb -o ${MOL}.gro -p ${MOL}.top -ter -ignh
However, I get an error message that states:
Atom OXT in residue SER 29 was not found in rtp entr
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