[gmx-users] change of bilayer structure during NVT equilibration

Dear gromacs users My system contains DOPC + CHOLESTEROLO + WATER in a rectangular box. I did energy minimization successfully with following mdp file. -- ; Parameters describing what to do, when to stop and what

Re: [gmx-users] change of bilayer structure during NVT equilibration

On 10/6/13 10:03 AM, shahab shariati wrote: Dear gromacs users My system contains DOPC + CHOLESTEROLO + WATER in a rectangular box. I did energy minimization successfully with following mdp file. -- ;

[gmx-users] change of bilayer structure during NVT equilibration

Dear Justin Very thanks for your quick reply. Depends on how you prepared the system. For initial structure of system, I used coordination from website: http://people.su.se/~jjm/Stockholm_Lipids/Downloads.html Probably there were voids in the solvent or lipid headgroups that caused

Re: [gmx-users] change of bilayer structure during NVT equilibration

On 10/6/13 10:57 AM, shahab shariati wrote: Dear Justin Very thanks for your quick reply. Depends on how you prepared the system. For initial structure of system, I used coordination from website: http://people.su.se/~jjm/Stockholm_Lipids/Downloads.html Note that these lipids require