[gmx-users] construct lipid bilayer from a single lipid

2007-08-12 Thread Chris Neale
Yesterday I tried to construct a lipid bilayer through a single lipid. The process is like this: 1. editconf -f lipid.pdb -princ -c -box 0.8 0.8 3.0 -o lipid.gro 2. genconf -f lipid.gro -nbox 4 4 1 -o box.gro 3. modified vanderwals radii in the vanradii.dat in the top folder ,changed the C value

[gmx-users] construct lipid bilayer from a single lipid

2007-08-11 Thread Shanshan Qin
Yesterday I tried to construct a lipid bilayer through a single lipid. The process is like this: 1. editconf -f lipid.pdb -princ -c -box 0.8 0.8 3.0 -o lipid.gro 2. genconf -f lipid.gro -nbox 4 4 1 -o box.gro 3. modified vanderwals radii in the vanradii.dat in the top folder ,changed the C value

[gmx-users] construct lipid bilayer from a single lipid

2007-08-11 Thread Shanshan Qin
Hello, gmx-users.Today I tried to construct a lipid bilayer through a single lipid. The process is like this: 1. editconf -f lipid.pdb -princ -c -box 0.8 0.8 3.0 -o lipid.gro 2. genconf -f lipid.gro -nbox 4 4 1 -o box.gro 3. modified vanderwals radii in the vanradii.dat in the top folder ,changed

[gmx-users] construct lipid bilayer from a single lipid

2007-08-11 Thread Shanshan Qin
Hello, gmx-users.Today I tried to construct a lipid bilayer through a single lipid. The process is like this: 1. editconf -f lipid.pdb -princ -c -box 0.8 0.8 3.0 -o lipid.gro 2. genconf -f lipid.gro -nbox 4 4 1 -o box.gro 3. modified vanderwals radii in the vanradii.dat in the top folder ,chang

[gmx-users] construct lipid bilayer from a single lipid

2007-08-11 Thread Shanshan Qin
Hello, gmx-users.Today I tried to construct a lipid bilayer through a single lipid. The process is like this: 1. editconf -f lipid.pdb -princ -c -box 0.8 0.8 3.0 -o lipid.gro 2. genconf -f lipid.gro -nbox 4 4 1 -o box.gro 3. modified vanderwals radii in the vanradii.dat in the top folder ,changed