subject:"\[gmx\-users\] cutting a cylinder from simulation box"

Re: [gmx-users] cutting a cylinder from simulation box

2012-02-27 Thread Jianguo Li

2012, 7:49 Subject: [gmx-users] cutting a cylinder from simulation box Hi, I have run a simulation of a fixed object in water using gromacs. Now, I want to analyze only water molecules which are present within a cylinder of certain radius (smaller than simulation box dimension in XY plane)

Re: [gmx-users] cutting a cylinder from simulation box

2012-02-27 Thread Mark Abraham

On 28/02/2012 10:49 AM, Sanku M wrote: Hi, I have run a simulation of a fixed object in water using gromacs. Now, I want to analyze only water molecules which are present within a cylinder of certain radius (smaller than simulation box dimension in XY plane). I wonder whether gromacs has any

[gmx-users] cutting a cylinder from simulation box

2012-02-27 Thread Sanku M

Hi, I have run a simulation of a fixed object in water using gromacs. Now, I want to analyze only water molecules which are present within a cylinder of certain radius (smaller than simulation box dimension in XY plane). I wonder whether gromacs has any particular tool which can identify the p