: Discussion list for GROMACS users
Subject: Re: RE: [gmx-users] find the relevant structure out
- Original Message -
From: #ZHAO LINA#
Date: Wednesday, November 24, 2010 17:52
Subject: RE: [gmx-users] find the relevant structure out
To: Discussion list for GROMACS users
> Hi,
>
> T
- Original Message -
From: #ZHAO LINA#
Date: Wednesday, November 24, 2010 17:52
Subject: RE: [gmx-users] find the relevant structure out
To: Discussion list for GROMACS users
> Hi,
>
> Thanks for your answering.
>
> Due to the difference in assignment, so I won
.org [gmx-users-boun...@gromacs.org] on behalf
of Tsjerk Wassenaar [tsje...@gmail.com]
Sent: Wednesday, November 24, 2010 1:27 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] find the relevant structure out
Hi,
> Visualization software can sometimes assign the secondary structure
&g
Hi,
> Visualization software can sometimes assign the secondary structure
> incorrectly.
There has been an interesting discussion on this on the Pymol user
list years ago
(http://www.mail-archive.com/pymol-us...@lists.sourceforge.net/msg01574.html).
Secondary structure assignment is foremost hu
oun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf
> of Mark Abraham [mark.abra...@anu.edu.au]
> Sent: Sunday, November 21, 2010 11:58 PM
> To: Discussion list for GROMACS users
> Subject: Re: [gmx-users] find the relevant structure out
>
> On 21/11/2010 11:43 PM, #ZHAO LINA#
]
Sent: Sunday, November 21, 2010 11:58 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] find the relevant structure out
On 21/11/2010 11:43 PM, #ZHAO LINA# wrote:
Hi,
I had done 10ns simulation,
by dssp, can see the beta-sheet appeared very apparently, before it's
alpha-
_
From: gmx-users-boun...@gromacs.org [gmx-users-boun...@gromacs.org] on behalf
of Mark Abraham [mark.abra...@anu.edu.au]
Sent: Sunday, November 21, 2010 11:58 PM
To: Discussion list for GROMACS users
Subject: Re: [gmx-users] find the relevant structure out
On 21/11/2010 11:43 PM, #ZHAO LIN
On 21/11/2010 11:43 PM, #ZHAO LINA# wrote:
Hi,
I had done 10ns simulation,
by dssp, can see the beta-sheet appeared very apparently, before it's
alpha-helix.
there were 5000 frames, I based on the time of the picture got from
dssp, I can guess around which frames is supposed to have those b
Hi,
I had done 10ns simulation,
by dssp, can see the beta-sheet appeared very apparently, before it's
alpha-helix.
there were 5000 frames, I based on the time of the picture got from dssp, I can
guess around which frames is supposed to have those beta sheets.
After I took few frames which I t
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