Hi,
The nearest neighbours are defined according to RMSD between the
structures. If M=10, a new conformation x is added to a given cluster
when a conformation y in the cluster exists such that:
(1) x and y are neighbours, i.e., x has y among the 10 conformations
with minimal RMSD to x and vice
Hello,
In the Jarvis-Patrick method g_cluster shows that when M=0, the cutoff is
used to determine nearest neighbors (those within X.X nm). In the absence of
cutoff - e.g. M is defaulted to 10, how are nearest neighbors determined? What
does M=10 (or anyother number) mean?
Thanks, Marc--
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