Dear gmx users:
I am using gms 4.07, my system contains a protein with net charge and a
plain,here I want to calculate the the angle between the dipoles of protein
and the XY plain vs. time. What should I do?
And is this way right:
I define a positive center and a negative center, and define a vector which
point from the negative center to the positive center, and the angle between
the vector and the plain is what I want?
Or the “g_dipoles” command is exactly doing the way I mentioned before? If
so ,please tell me the details on how to get the results use this command!
Thanks a lot!
Li
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