Re: [gmx-users] g_hbond Issues

2009-09-13 Thread Justin A. Lemkul
Anil Kumar wrote: Dear Mark, Thanks for your suggestions of including/using index file. This is fine but is it not a cumbersome process to define for different length of systems in this way! Since, one has to define/make the group for each carbonyl group with other pairs! Using index fi

Re: [gmx-users] g_hbond Issues

2009-09-13 Thread Anil Kumar
Dear Mark, Thanks for your suggestions of including/using index file. This is fine but is it not a cumbersome process to define for different length of systems in this way! Since, one has to define/make the group for each carbonyl group with other pairs! Anyway for the time being I am using this

Re: [gmx-users] g_hbond Issues

2009-09-13 Thread Mark Abraham
Anil Kumar wrote: Dear Gmx Users, I need to calculate the H-Bonds of simulation trajectory with specification of i to i+2/3/4/5 so on..and i to i -2/3/4/5 so on...separately. Do anyone have any idea how to do this...since the present option g_hbond calculate both the hydrogen bonds together irr

[gmx-users] g_hbond Issues

2009-09-13 Thread Anil Kumar
Dear Gmx Users, I need to calculate the H-Bonds of simulation trajectory with specification of i to i+2/3/4/5 so on..and i to i -2/3/4/5 so on...separately. Do anyone have any idea how to do this...since the present option g_hbond calculate both the hydrogen bonds together irrespective of i to i+