[gmx-users] g_spatial and vmd volume slice

Dear XAvier, "I have played with this recently and could not find the way to set or change the colors on the volume slice." see my previous post about how to do this with black/white and gimp/ photoshop I did not find any mention of this in your previous post. But it is ok. Sorry for

Re: [gmx-users] g_spatial and vmd volume slice

"I have played with this recently and could not find the way to set or change the colors on the volume slice." see my previous post about how to do this with black/white and gimp/ photoshop I did not find any mention of this in your previous post. But it is ok. "Moreover I found that the

[gmx-users] g_spatial and vmd volume slice

Dear Xavier, "I have played with this recently and could not find the way to set or change the colors on the volume slice." see my previous post about how to do this with black/white and gimp/photoshop "Moreover I found that the colors, although clearly showing the expected pattern for th

[gmx-users] g_spatial and vmd volume slice

Dear Jinyao, this is quickly becoming a vmd-mailing list question, but I'll give it one more set of replies. I would appreciate if you would coallate these into a single how-to and put it on the gromacs wiki once you have figured out how to do it. >Dear chris, > Thank you for you help. > I

[gmx-users] g_spatial and vmd volume slice (was "chris")

Dear Jinyao, 1. Your usage of trjconv prior to g_spatial is incorrect. trjconv -s a.tpr -f a.xtc -o b.xtc -center tric -ur compact -pbc none Since you didn't center your atoms of interest, you will not get good results. 2. what happens when you run g_spatial? Do you get some strange notes or w