Re: [gmx-users] g_traj with xtc_grps ... all coordinates zero

2007-02-27 Thread Mark Abraham
When starting a new topic, please start a new email with a new subject line. Not only does this maximize the chance that people who know the answer to your problem will read about your problem, but you use everybody's time more efficiently. ravi kant wrote: I am trying to study the properties

Re: [gmx-users] g_traj with xtc_grps ... all coordinates zero

2007-02-27 Thread ravi kant
Hi all, I am trying to study the properties of Argon by NVT simulation. The configuration file of Ar which I generated fills the half of simulation box (cuboid) with Ar atoms and rests nothing. After running the simulation I found that some regions of cubiod were highly packed with Ar compared t

Re: [gmx-users] g_traj with xtc_grps ... all coordinates zero

2007-02-26 Thread Mark Abraham
> > Dear all, > > In the mdp input file of an MD simulation i have: > nstxtcout= 20 > xtc_grps = cwat > I tell mdrun to write the coordinates of a small group > of 4 waters to a file called traj1.xtc every 20 steps. > the xtc file is created and has a non-zero size.

[gmx-users] g_traj with xtc_grps ... all coordinates zero

2007-02-26 Thread Michael Brunsteiner
Dear all, In the mdp input file of an MD simulation i have: nstxtcout= 20 xtc_grps = cwat I tell mdrun to write the coordinates of a small group of 4 waters to a file called traj1.xtc every 20 steps. the xtc file is created and has a non-zero size. However, if i s