Re: [gmx-users] g_wham with cylinder geometry

2012-02-16 Thread Jochen Hub
Hi MPID, I just stepped over your message quite late, so sorry for the late reply. You can simply generate a new set of tpr files with pull_dim= N N Y, and use that one in g_wham. g_wham only picks the force constants and umbrella centers from the tpr files, so you are fine with that.

[gmx-users] g_wham with cylinder geometry

2012-02-10 Thread MPID
Hi everyone. I ran an umbrella sampling simulation of a protein in a membrane. I used pull_geometry=cylinder. I tried to analyze the results with g_wham. I got this error: Fatal error: With pull geometry 'cylinder', expected pulling in Z direction only. However, found dimensions [Y Y Y] The