RE: [gmx-users] membrane bilayer simulation by OPLS FF

2011-02-21 Thread Dallas Warren
-users-boun...@gromacs.org [mailto:gmx-users- > boun...@gromacs.org] On Behalf Of mirc...@sjtu.edu.cn > Sent: Tuesday, 22 February 2011 4:18 PM > To: gmx-users@gromacs.org > Subject: [gmx-users] membrane bilayer simulation by OPLS FF > > Dear All: > > I am using OPLS force f

[gmx-users] membrane bilayer simulation by OPLS FF

2011-02-21 Thread mircial
Dear All: I am using OPLS force field (OPLS FF) to do molecular dynamics simulations. My system contains DPPC lipid, protein and a small molecule. I have the following questions: 1, where can I get the topology files for the DPPC lipids? 2, How to prepare the topology files for the small m