Re: [gmx-users] membrane protein-free energy

2010-09-07 Thread Justin A. Lemkul
Poojari, Chetan wrote: Hi, I have done MD simulations of membrane-protein. I want to calculate interaction energies between protein and headgroup, protein and hydrophobic core (in the bilayer). Please can anyone suggest me the method that should be followed to carry out these analysis. Plea

[gmx-users] membrane protein-free energy

2010-09-07 Thread Poojari, Chetan
Hi, I have done MD simulations of membrane-protein. I want to calculate interaction energies between protein and headgroup, protein and hydrophobic core (in the bilayer). Please can anyone suggest me the method that should be followed to carry out these analysis. kind regards and best wishes,