Re: [gmx-users] only one cpu works in my linux cluster

the relevant manuals. - Original Message From: liu xin [EMAIL PROTECTED] To: Discussion list for GROMACS users gmx-users@gromacs.org Sent: Tuesday, October 9, 2007 1:38:50 PM Subject: Re: [gmx-users] only one cpu works in my linux cluster Thanks Alan in fact I've already added the option

Re: [gmx-users] only one cpu works in my linux cluster

this. - Original Message From: liu xin [EMAIL PROTECTED] To: Discussion list for GROMACS users gmx-users@gromacs.org Sent: Monday, October 8, 2007 1:51:12 PM Subject: [gmx-users] only one cpu works in my linux cluster Dear GMXers this is how I've done it so far

[gmx-users] only one cpu works in my linux cluster

Dear GMXers this is how I've done it so far: grompp -f -c -p -o 12np.tpr -np 12 qsub -l node=6 12np.sh (/home/me/mpich2/bin/mpirun -np 12 mdrun -s 12np.tpr-np 12 ) then it seems my mdrun works fine, but when I ssh to each node to check the cpu efficiency with top, I find that there's only one cpu

Re: [gmx-users] only one cpu works in my linux cluster

-users] only one cpu works in my linux cluster Dear GMXers this is how I've done it so far: grompp -f -c -p -o 12np.tpr -np 12 qsub -l node=6 12np.sh (/home/me/mpich2/bin/mpirun -np 12 mdrun -s 12np.tpr -np 12 ) then it seems my mdrun works fine, but when I ssh to each node to check the cpu