[gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Dr Itamar Kass
Shalom all, To my best understanding, there is a correction to the single precision integration problem (A common, avoidable source of error in molecular dynamics integrators J. Chem. Phys. 126, 046101 (2007).) at the CVS. I want to know were can I get it and how to install it. First, the

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Yang Ye
On 4/11/2007 5:52 PM, Dr Itamar Kass wrote: Shalom all, To my best understanding, there is a correction to the single precision integration problem (A common, avoidable source of error in molecular dynamics integrators J. Chem. Phys. 126, 046101 (2007).) at the CVS. I want to know were can I

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread David van der Spoel
Yang Ye wrote: On 4/11/2007 5:52 PM, Dr Itamar Kass wrote: Shalom all, To my best understanding, there is a correction to the single precision integration problem (A common, avoidable source of error in molecular dynamics integrators J. Chem. Phys. 126, 046101 (2007).) at the CVS. I want to

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Berk Hess
From: David van der Spoel [EMAIL PROTECTED] Reply-To: Discussion list for GROMACS users gmx-users@gromacs.org To: Discussion list for GROMACS users gmx-users@gromacs.org Subject: Re: [gmx-users] overcome the integration problem (installing CVS) Date: Wed, 11 Apr 2007 12:13:13 +0200 Yang Ye

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread Michael Shirts
Hi, all- I would like to add that for a constant temperature ensemble the effect of this fix is neglegible. It is only useful for constant NVE simulations. Berk. I think this might need some qualifications. If the constant temperature dynamics are based inherently on NVE dynamics, they must

Re: [gmx-users] overcome the integration problem (installing CVS)

2007-04-11 Thread David van der Spoel
Michael Shirts wrote: Hi, all- I would like to add that for a constant temperature ensemble the effect of this fix is neglegible. It is only useful for constant NVE simulations. Berk. I think this might need some qualifications. If the constant temperature dynamics are based inherently on