Re: [gmx-users] p0_4238: p4_error: interrupt SIGSEGV: 11

2009-10-13 Thread Yongchul Chung
I jumped to the conclusion too fast. Thanks Justin for correcting me. Disregard my previous comment please. On Tue, Oct 13, 2009 at 10:35 PM, Justin A. Lemkul wrote: > > > Yongchul Chung wrote: > >> I think your box is too small. try changing them. >> >> > What leads you to this conclusion? We

Re: [gmx-users] p0_4238: p4_error: interrupt SIGSEGV: 11

2009-10-13 Thread Justin A. Lemkul
Yongchul Chung wrote: I think your box is too small. try changing them. What leads you to this conclusion? We have no information about the box. Presumably, the only box that is "too small" would be one that doesn't satisfy the minimum image convention, but grompp fails with a fatal error

Re: [gmx-users] p0_4238: p4_error: interrupt SIGSEGV: 11

2009-10-13 Thread Yongchul Chung
I think your box is too small. try changing them. On Tue, Oct 13, 2009 at 8:05 PM, Justin A. Lemkul wrote: > > > Nilesh Dhumal wrote: > >> Hello, >> >> I am trying to equilibrate glucose in water using Gromacs >> 4.0.5 version. I am geting the error immidiately after the mdrun starts >> Warning

Re: [gmx-users] p0_4238: p4_error: interrupt SIGSEGV: 11

2009-10-13 Thread Justin A. Lemkul
Nilesh Dhumal wrote: Hello, I am trying to equilibrate glucose in water using Gromacs 4.0.5 version. I am geting the error immidiately after the mdrun starts Warning: 1-4 interaction between 1 and 18 at distance 3.462 which is larger than the 1-4 table size 2.400 nm These are ignored for the

Re: [gmx-users] p0_4238: p4_error: interrupt SIGSEGV: 11

2009-10-13 Thread Mark Abraham
Nilesh Dhumal wrote: Hello, I am trying to equilibrate glucose in water using Gromacs 4.0.5 version. I am geting the error immidiately after the mdrun starts Warning: 1-4 interaction between 1 and 18 at distance 3.462 which is larger than the 1-4 table size 2.400 nm These are ignored for the re

[gmx-users] p0_4238: p4_error: interrupt SIGSEGV: 11

2009-10-13 Thread Nilesh Dhumal
Hello, I am trying to equilibrate glucose in water using Gromacs 4.0.5 version. I am geting the error immidiately after the mdrun starts Warning: 1-4 interaction between 1 and 18 at distance 3.462 which is larger than the 1-4 table size 2.400 nm These are ignored for the rest of the simulation Th